fast.genomicscompare 6,575 genera of bacteria & archaea

 

JAVDDU01 sp030848505 ABcell2

Genome identifier: GCF_030848505.1

NCBI assembly name: ASM3084850v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Cellvibrionaceae, JAVDDU01, JAVDDU01 sp030848505

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Cellvibrionales, Cellvibrionaceae, Marinimicrobium

Scaffolds: 30

Genes: 3,540 Protein-coding: 3,490 RNAs: 48 pseudogenes: 2

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_JAVDDU010000001.1 Marinimicrobium sp. ABcell2 1, whole genome shotgun sequence 751,129
NZ_JAVDDU010000002.1 Marinimicrobium sp. ABcell2 2, whole genome shotgun sequence 669,776
NZ_JAVDDU010000003.1 Marinimicrobium sp. ABcell2 3, whole genome shotgun sequence 560,237
NZ_JAVDDU010000004.1 Marinimicrobium sp. ABcell2 4, whole genome shotgun sequence 423,914
NZ_JAVDDU010000005.1 Marinimicrobium sp. ABcell2 5, whole genome shotgun sequence 279,928
NZ_JAVDDU010000006.1 Marinimicrobium sp. ABcell2 6, whole genome shotgun sequence 209,694
NZ_JAVDDU010000007.1 Marinimicrobium sp. ABcell2 7, whole genome shotgun sequence 177,548
NZ_JAVDDU010000008.1 Marinimicrobium sp. ABcell2 8, whole genome shotgun sequence 150,280
NZ_JAVDDU010000009.1 Marinimicrobium sp. ABcell2 9, whole genome shotgun sequence 145,227
NZ_JAVDDU010000010.1 Marinimicrobium sp. ABcell2 10, whole genome shotgun sequence 144,611
NZ_JAVDDU010000011.1 Marinimicrobium sp. ABcell2 11, whole genome shotgun sequence 113,256
NZ_JAVDDU010000012.1 Marinimicrobium sp. ABcell2 12, whole genome shotgun sequence 106,294
NZ_JAVDDU010000013.1 Marinimicrobium sp. ABcell2 13, whole genome shotgun sequence 72,542
NZ_JAVDDU010000014.1 Marinimicrobium sp. ABcell2 14, whole genome shotgun sequence 57,844
NZ_JAVDDU010000015.1 Marinimicrobium sp. ABcell2 15, whole genome shotgun sequence 49,506
NZ_JAVDDU010000016.1 Marinimicrobium sp. ABcell2 16, whole genome shotgun sequence 35,478
NZ_JAVDDU010000017.1 Marinimicrobium sp. ABcell2 17, whole genome shotgun sequence 10,743
NZ_JAVDDU010000018.1 Marinimicrobium sp. ABcell2 18, whole genome shotgun sequence 6,223
NZ_JAVDDU010000019.1 Marinimicrobium sp. ABcell2 19, whole genome shotgun sequence 6,029
NZ_JAVDDU010000020.1 Marinimicrobium sp. ABcell2 20, whole genome shotgun sequence 2,531
NZ_JAVDDU010000021.1 Marinimicrobium sp. ABcell2 21, whole genome shotgun sequence 1,730
NZ_JAVDDU010000022.1 Marinimicrobium sp. ABcell2 22, whole genome shotgun sequence 1,635
NZ_JAVDDU010000023.1 Marinimicrobium sp. ABcell2 23, whole genome shotgun sequence 1,619
NZ_JAVDDU010000024.1 Marinimicrobium sp. ABcell2 24, whole genome shotgun sequence 1,605
NZ_JAVDDU010000025.1 Marinimicrobium sp. ABcell2 25, whole genome shotgun sequence 1,448
NZ_JAVDDU010000026.1 Marinimicrobium sp. ABcell2 26, whole genome shotgun sequence 1,357
NZ_JAVDDU010000027.1 Marinimicrobium sp. ABcell2 27, whole genome shotgun sequence 1,338
NZ_JAVDDU010000028.1 Marinimicrobium sp. ABcell2 28, whole genome shotgun sequence 1,280
NZ_JAVDDU010000029.1 Marinimicrobium sp. ABcell2 29, whole genome shotgun sequence 1,258
NZ_JAVDDU010000030.1 Marinimicrobium sp. ABcell2 30, whole genome shotgun sequence 1,251

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory