fast.genomicscompare 6,575 genera of bacteria & archaea

 

Massilioclostridium facile Marseille-P2976T

Genome identifier: GCF_900095865.1

NCBI assembly name: PRJEB15310

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Oscillospirales, Ruminococcaceae, Massilioclostridium, Massilioclostridium facile

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Clostridiaceae, Massilioclostridium, Massilioclostridium coli

Scaffolds: 7

Genes: 2,588 Protein-coding: 2,479 RNAs: 79 pseudogenes: 30

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FMIZ01000001.1 Massilioclostridium coli strain Marseille-P2976T, whole genome shotgun sequence 3,303
NZ_FMIZ01000002.1 Massilioclostridium coli strain Marseille-P2976T, whole genome shotgun sequence 5,028
NZ_FMIZ01000003.1 Massilioclostridium coli strain Marseille-P2976T, whole genome shotgun sequence 5,259
NZ_FMIZ01000004.1 Massilioclostridium coli strain Marseille-P2976T, whole genome shotgun sequence 110,627
NZ_FMIZ01000005.1 Massilioclostridium coli strain Marseille-P2976T, whole genome shotgun sequence 388,347
NZ_FMIZ01000006.1 Massilioclostridium coli strain Marseille-P2976T, whole genome shotgun sequence 774,455
NZ_FMIZ01000007.1 Massilioclostridium coli strain Marseille-P2976T, whole genome shotgun sequence 1,698,311

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory