fast.genomicscompare 6,575 genera of bacteria & archaea

 

Peptococcus niger DSM 20475

Genome identifier: GCF_900101835.1

NCBI assembly name: IMG-taxon 2634166305 annotated assembly

GTDB taxonomy: Bacteria, Bacillota_B, Peptococcia, Peptococcales, Peptococcaceae, Peptococcus, Peptococcus niger

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Peptococcaceae, Peptococcus, Peptococcus niger

Scaffolds: 29

Genes: 1,916 Protein-coding: 1,823 RNAs: 69 pseudogenes: 24

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FNAF01000001.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 330,360
NZ_FNAF01000002.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 247,187
NZ_FNAF01000003.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 242,709
NZ_FNAF01000004.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 223,601
NZ_FNAF01000005.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 140,622
NZ_FNAF01000006.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 113,344
NZ_FNAF01000007.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 81,959
NZ_FNAF01000008.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 75,170
NZ_FNAF01000009.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 73,766
NZ_FNAF01000010.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 67,120
NZ_FNAF01000011.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 57,366
NZ_FNAF01000012.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 48,079
NZ_FNAF01000013.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 47,694
NZ_FNAF01000014.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 31,436
NZ_FNAF01000015.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 28,977
NZ_FNAF01000016.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 24,537
NZ_FNAF01000017.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 22,015
NZ_FNAF01000018.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 21,249
NZ_FNAF01000019.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 16,994
NZ_FNAF01000020.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 15,772
NZ_FNAF01000021.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 15,738
NZ_FNAF01000022.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 11,627
NZ_FNAF01000023.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 8,160
NZ_FNAF01000024.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 7,197
NZ_FNAF01000025.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 6,637
NZ_FNAF01000026.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 5,428
NZ_FNAF01000027.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 1,548
NZ_FNAF01000028.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 1,111
NZ_FNAF01000029.1 Peptococcus niger strain DSM 20475, whole genome shotgun sequence 1,070

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory