fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudodesulfuromonas thiophila DSM 8987

Genome identifier: GCF_900101955.1

NCBI assembly name: IMG-taxon 2602042025 annotated assembly

GTDB taxonomy: Bacteria, Desulfobacterota, Desulfuromonadia, Desulfuromonadales, Desulfuromonadaceae, Pseudodesulfuromonas, Pseudodesulfuromonas thiophila

NCBI taxonomy: Bacteria, Thermodesulfobacteriota, Desulfuromonadia, Desulfuromonadales, Desulfuromonadaceae, Desulfuromonas, Desulfuromonas thiophila

Scaffolds: 39

Genes: 2,553 Protein-coding: 2,476 RNAs: 56 pseudogenes: 21

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FNAQ01000001.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 501,858
NZ_FNAQ01000002.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 339,575
NZ_FNAQ01000003.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 295,391
NZ_FNAQ01000004.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 222,861
NZ_FNAQ01000005.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 111,360
NZ_FNAQ01000006.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 105,888
NZ_FNAQ01000007.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 105,035
NZ_FNAQ01000008.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 99,781
NZ_FNAQ01000009.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 98,747
NZ_FNAQ01000010.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 88,012
NZ_FNAQ01000011.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 82,133
NZ_FNAQ01000012.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 78,710
NZ_FNAQ01000013.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 70,871
NZ_FNAQ01000014.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 60,403
NZ_FNAQ01000015.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 57,817
NZ_FNAQ01000016.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 52,358
NZ_FNAQ01000017.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 52,422
NZ_FNAQ01000018.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 50,317
NZ_FNAQ01000019.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 44,155
NZ_FNAQ01000020.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 41,870
NZ_FNAQ01000021.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 41,101
NZ_FNAQ01000022.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 32,335
NZ_FNAQ01000023.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 30,689
NZ_FNAQ01000024.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 25,517
NZ_FNAQ01000025.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 25,167
NZ_FNAQ01000026.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 16,868
NZ_FNAQ01000027.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 11,855
NZ_FNAQ01000028.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 8,529
NZ_FNAQ01000029.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 8,347
NZ_FNAQ01000030.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 6,072
NZ_FNAQ01000031.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 5,826
NZ_FNAQ01000032.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 4,265
NZ_FNAQ01000033.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 2,839
NZ_FNAQ01000034.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 2,730
NZ_FNAQ01000035.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 2,167
NZ_FNAQ01000036.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 1,984
NZ_FNAQ01000037.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 1,749
NZ_FNAQ01000038.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 1,323
NZ_FNAQ01000039.1 Desulfuromonas thiophila strain DSM 8987, whole genome shotgun sequence 1,040

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory