fast.genomicscompare 6,575 genera of bacteria & archaea

 

Afifella marina DSM 2698

Genome identifier: GCF_900102695.1

NCBI assembly name: IMG-taxon 2595699009 annotated assembly

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Afifellaceae, Afifella, Afifella marina

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Afifellaceae, Afifella, Afifella marina

Scaffolds: 24

Genes: 3,720 Protein-coding: 3,642 RNAs: 52 pseudogenes: 26

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FMVW01000001.1 Afifella marina DSM 2698, whole genome shotgun sequence 1,019,668
NZ_FMVW01000002.1 Afifella marina DSM 2698, whole genome shotgun sequence 674,159
NZ_FMVW01000003.1 Afifella marina DSM 2698, whole genome shotgun sequence 411,663
NZ_FMVW01000004.1 Afifella marina DSM 2698, whole genome shotgun sequence 344,456
NZ_FMVW01000005.1 Afifella marina DSM 2698, whole genome shotgun sequence 322,133
NZ_FMVW01000006.1 Afifella marina DSM 2698, whole genome shotgun sequence 214,759
NZ_FMVW01000007.1 Afifella marina DSM 2698, whole genome shotgun sequence 203,312
NZ_FMVW01000008.1 Afifella marina DSM 2698, whole genome shotgun sequence 184,895
NZ_FMVW01000009.1 Afifella marina DSM 2698, whole genome shotgun sequence 184,350
NZ_FMVW01000010.1 Afifella marina DSM 2698, whole genome shotgun sequence 118,601
NZ_FMVW01000011.1 Afifella marina DSM 2698, whole genome shotgun sequence 84,058
NZ_FMVW01000012.1 Afifella marina DSM 2698, whole genome shotgun sequence 73,908
NZ_FMVW01000013.1 Afifella marina DSM 2698, whole genome shotgun sequence 24,414
NZ_FMVW01000014.1 Afifella marina DSM 2698, whole genome shotgun sequence 21,154
NZ_FMVW01000015.1 Afifella marina DSM 2698, whole genome shotgun sequence 20,753
NZ_FMVW01000016.1 Afifella marina DSM 2698, whole genome shotgun sequence 17,442
NZ_FMVW01000017.1 Afifella marina DSM 2698, whole genome shotgun sequence 14,204
NZ_FMVW01000018.1 Afifella marina DSM 2698, whole genome shotgun sequence 8,018
NZ_FMVW01000019.1 Afifella marina DSM 2698, whole genome shotgun sequence 6,383
NZ_FMVW01000020.1 Afifella marina DSM 2698, whole genome shotgun sequence 3,647
NZ_FMVW01000021.1 Afifella marina DSM 2698, whole genome shotgun sequence 3,474
NZ_FMVW01000022.1 Afifella marina DSM 2698, whole genome shotgun sequence 2,706
NZ_FMVW01000023.1 Afifella marina DSM 2698, whole genome shotgun sequence 2,658
NZ_FMVW01000024.1 Afifella marina DSM 2698, whole genome shotgun sequence 2,606

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory