fast.genomicscompare 6,575 genera of bacteria & archaea

 

Salinimicrobium catena CGMCC 1.6101

Genome identifier: GCF_900102915.1

NCBI assembly name: IMG-taxon 2617270763 annotated assembly

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Flavobacteriales, Flavobacteriaceae, Salinimicrobium, Salinimicrobium catena

NCBI taxonomy: Bacteria, Bacteroidota, Flavobacteriia, Flavobacteriales, Flavobacteriaceae, Salinimicrobium, Salinimicrobium catena

Scaffolds: 26

Genes: 3,006 Protein-coding: 2,948 RNAs: 48 pseudogenes: 10

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FNGG01000001.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 1,013,726
NZ_FNGG01000002.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 721,501
NZ_FNGG01000003.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 356,572
NZ_FNGG01000004.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 257,103
NZ_FNGG01000005.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 164,555
NZ_FNGG01000006.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 125,931
NZ_FNGG01000007.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 108,721
NZ_FNGG01000008.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 98,184
NZ_FNGG01000009.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 81,070
NZ_FNGG01000010.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 60,960
NZ_FNGG01000011.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 52,337
NZ_FNGG01000012.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 48,725
NZ_FNGG01000013.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 37,273
NZ_FNGG01000014.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 17,577
NZ_FNGG01000015.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 16,437
NZ_FNGG01000016.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 16,080
NZ_FNGG01000017.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 15,124
NZ_FNGG01000018.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 15,016
NZ_FNGG01000019.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 12,565
NZ_FNGG01000020.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 10,187
NZ_FNGG01000021.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 8,740
NZ_FNGG01000022.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 7,309
NZ_FNGG01000023.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 5,702
NZ_FNGG01000024.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 5,588
NZ_FNGG01000025.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 3,166
NZ_FNGG01000026.1 Salinimicrobium catena strain CGMCC 1.6101, whole genome shotgun sequence 1,316

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory