fast.genomicscompare 6,575 genera of bacteria & archaea

 

Jannaschia helgolandensis DSM 14858

Genome identifier: GCF_900109285.1

NCBI assembly name: IMG-taxon 2622736446 annotated assembly

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Jannaschia, Jannaschia helgolandensis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Jannaschia, Jannaschia helgolandensis

Scaffolds: 14

Genes: 3,580 Protein-coding: 3,481 RNAs: 49 pseudogenes: 50

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FNZQ01000001.1 Jannaschia helgolandensis strain DSM 14858, whole genome shotgun sequence 1,418,558
NZ_FNZQ01000002.1 Jannaschia helgolandensis strain DSM 14858, whole genome shotgun sequence 395,942
NZ_FNZQ01000003.1 Jannaschia helgolandensis strain DSM 14858, whole genome shotgun sequence 362,961
NZ_FNZQ01000004.1 Jannaschia helgolandensis strain DSM 14858, whole genome shotgun sequence 353,773
NZ_FNZQ01000005.1 Jannaschia helgolandensis strain DSM 14858, whole genome shotgun sequence 282,431
NZ_FNZQ01000006.1 Jannaschia helgolandensis strain DSM 14858, whole genome shotgun sequence 208,280
NZ_FNZQ01000007.1 Jannaschia helgolandensis strain DSM 14858, whole genome shotgun sequence 179,083
NZ_FNZQ01000008.1 Jannaschia helgolandensis strain DSM 14858, whole genome shotgun sequence 145,772
NZ_FNZQ01000009.1 Jannaschia helgolandensis strain DSM 14858, whole genome shotgun sequence 120,034
NZ_FNZQ01000010.1 Jannaschia helgolandensis strain DSM 14858, whole genome shotgun sequence 57,092
NZ_FNZQ01000011.1 Jannaschia helgolandensis strain DSM 14858, whole genome shotgun sequence 24,101
NZ_FNZQ01000012.1 Jannaschia helgolandensis strain DSM 14858, whole genome shotgun sequence 12,323
NZ_FNZQ01000013.1 Jannaschia helgolandensis strain DSM 14858, whole genome shotgun sequence 1,424
NZ_FNZQ01000014.1 Jannaschia helgolandensis strain DSM 14858, whole genome shotgun sequence 1,086

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory