fast.genomicscompare 6,575 genera of bacteria & archaea

 

Amphritea atlantica DSM 18887

Genome identifier: GCF_900111095.1

NCBI assembly name: IMG-taxon 2599185211 annotated assembly

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Nitrincolaceae, Amphritea, Amphritea atlantica

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Oceanospirillales, Oceanospirillaceae, Amphritea, Amphritea atlantica

Scaffolds: 32

Genes: 4,389 Protein-coding: 4,301 RNAs: 64 pseudogenes: 24

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FOGB01000001.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 712,881
NZ_FOGB01000002.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 565,625
NZ_FOGB01000003.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 401,709
NZ_FOGB01000004.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 381,083
NZ_FOGB01000005.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 292,277
NZ_FOGB01000006.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 276,135
NZ_FOGB01000007.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 242,119
NZ_FOGB01000008.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 207,505
NZ_FOGB01000009.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 199,543
NZ_FOGB01000010.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 178,325
NZ_FOGB01000011.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 131,966
NZ_FOGB01000012.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 126,798
NZ_FOGB01000013.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 115,993
NZ_FOGB01000014.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 113,026
NZ_FOGB01000015.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 111,726
NZ_FOGB01000016.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 111,631
NZ_FOGB01000017.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 100,044
NZ_FOGB01000018.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 76,614
NZ_FOGB01000019.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 67,576
NZ_FOGB01000020.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 61,361
NZ_FOGB01000021.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 53,208
NZ_FOGB01000022.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 45,312
NZ_FOGB01000023.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 37,537
NZ_FOGB01000024.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 35,524
NZ_FOGB01000025.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 31,124
NZ_FOGB01000026.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 18,811
NZ_FOGB01000027.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 16,030
NZ_FOGB01000028.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 9,828
NZ_FOGB01000029.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 5,199
NZ_FOGB01000030.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 4,247
NZ_FOGB01000031.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 2,378
NZ_FOGB01000032.1 Amphritea atlantica strain DSM 18887, whole genome shotgun sequence 2,046

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory