fast.genomicscompare 6,575 genera of bacteria & archaea

 

Poseidonocella pacifica DSM 29316

Genome identifier: GCF_900111875.1

NCBI assembly name: IMG-taxon 2687453774 annotated assembly

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Poseidonocella, Poseidonocella pacifica

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Poseidonocella, Poseidonocella pacifica

Scaffolds: 11

Genes: 3,471 Protein-coding: 3,370 RNAs: 48 pseudogenes: 53

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FOJU01000001.1 Poseidonocella pacifica strain DSM 29316, whole genome shotgun sequence 1,089,185
NZ_FOJU01000002.1 Poseidonocella pacifica strain DSM 29316, whole genome shotgun sequence 725,841
NZ_FOJU01000003.1 Poseidonocella pacifica strain DSM 29316, whole genome shotgun sequence 683,326
NZ_FOJU01000004.1 Poseidonocella pacifica strain DSM 29316, whole genome shotgun sequence 404,573
NZ_FOJU01000005.1 Poseidonocella pacifica strain DSM 29316, whole genome shotgun sequence 398,612
NZ_FOJU01000006.1 Poseidonocella pacifica strain DSM 29316, whole genome shotgun sequence 85,418
NZ_FOJU01000007.1 Poseidonocella pacifica strain DSM 29316, whole genome shotgun sequence 77,563
NZ_FOJU01000008.1 Poseidonocella pacifica strain DSM 29316, whole genome shotgun sequence 74,815
NZ_FOJU01000009.1 Poseidonocella pacifica strain DSM 29316, whole genome shotgun sequence 74,099
NZ_FOJU01000010.1 Poseidonocella pacifica strain DSM 29316, whole genome shotgun sequence 6,351
NZ_FOJU01000011.1 Poseidonocella pacifica strain DSM 29316, whole genome shotgun sequence 2,225

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory