fast.genomics – compare 6,575 genera of bacteria & archaea

 

Halopelagius inordinatus CGMCC 1.7739

Genome identifier: GCF_900113245.1

NCBI assembly name: IMG-taxon 2617270917 annotated assembly

GTDB taxonomy: Archaea, Halobacteriota, Halobacteria, Halobacteriales, Haloferacaceae, Halopelagius, Halopelagius inordinatus

NCBI taxonomy: Archaea, Euryarchaeota, Halobacteria, Haloferacales, Haloferacaceae, Halopelagius, Halopelagius inordinatus

Scaffolds: 14

Genes: 3,649 Protein-coding: 3,567 RNAs: 59 pseudogenes: 23

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FOOQ01000001.1 Halopelagius inordinatus strain CGMCC 1.7739, whole genome shotgun sequence 1,482,769
NZ_FOOQ01000002.1 Halopelagius inordinatus strain CGMCC 1.7739, whole genome shotgun sequence 943,443
NZ_FOOQ01000003.1 Halopelagius inordinatus strain CGMCC 1.7739, whole genome shotgun sequence 187,334
NZ_FOOQ01000004.1 Halopelagius inordinatus strain CGMCC 1.7739, whole genome shotgun sequence 184,440
NZ_FOOQ01000005.1 Halopelagius inordinatus strain CGMCC 1.7739, whole genome shotgun sequence 174,169
NZ_FOOQ01000006.1 Halopelagius inordinatus strain CGMCC 1.7739, whole genome shotgun sequence 170,577
NZ_FOOQ01000007.1 Halopelagius inordinatus strain CGMCC 1.7739, whole genome shotgun sequence 116,713
NZ_FOOQ01000008.1 Halopelagius inordinatus strain CGMCC 1.7739, whole genome shotgun sequence 111,925
NZ_FOOQ01000009.1 Halopelagius inordinatus strain CGMCC 1.7739, whole genome shotgun sequence 68,962
NZ_FOOQ01000010.1 Halopelagius inordinatus strain CGMCC 1.7739, whole genome shotgun sequence 27,391
NZ_FOOQ01000011.1 Halopelagius inordinatus strain CGMCC 1.7739, whole genome shotgun sequence 26,131
NZ_FOOQ01000012.1 Halopelagius inordinatus strain CGMCC 1.7739, whole genome shotgun sequence 18,725
NZ_FOOQ01000013.1 Halopelagius inordinatus strain CGMCC 1.7739, whole genome shotgun sequence 12,074
NZ_FOOQ01000014.1 Halopelagius inordinatus strain CGMCC 1.7739, whole genome shotgun sequence 4,658

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory