fast.genomicscompare 6,575 genera of bacteria & archaea

 

Sphingomonas_P jatrophae S5-249

Genome identifier: GCF_900113315.1

NCBI assembly name: IMG-taxon 2654588199 annotated assembly

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingomonas_P, Sphingomonas_P jatrophae

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingomonas, Sphingomonas jatrophae

Scaffolds: 6

Genes: 3,888 Protein-coding: 3,814 RNAs: 60 pseudogenes: 14

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FOZG01000001.1 Sphingomonas jatrophae strain S5-249, whole genome shotgun sequence 1,962,229
NZ_FOZG01000002.1 Sphingomonas jatrophae strain S5-249, whole genome shotgun sequence 1,320,977
NZ_FOZG01000003.1 Sphingomonas jatrophae strain S5-249, whole genome shotgun sequence 749,797
NZ_FOZG01000004.1 Sphingomonas jatrophae strain S5-249, whole genome shotgun sequence 19,753
NZ_FOZG01000005.1 Sphingomonas jatrophae strain S5-249, whole genome shotgun sequence 5,175
NZ_FOZG01000006.1 Sphingomonas jatrophae strain S5-249, whole genome shotgun sequence 2,634

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory