fast.genomicscompare 6,575 genera of bacteria & archaea

 

Halpernia frigidisoli DSM 26000

Genome identifier: GCF_900113805.1

NCBI assembly name: IMG-taxon 2684622856 annotated assembly

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Flavobacteriales, Weeksellaceae, Halpernia, Halpernia frigidisoli

NCBI taxonomy: Bacteria, Bacteroidota, Flavobacteriia, Flavobacteriales, Weeksellaceae, Halpernia, Halpernia frigidisoli

Scaffolds: 11

Genes: 2,826 Protein-coding: 2,770 RNAs: 41 pseudogenes: 15

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FOQT01000001.1 Halpernia frigidisoli strain DSM 26000, whole genome shotgun sequence 1,079,781
NZ_FOQT01000002.1 Halpernia frigidisoli strain DSM 26000, whole genome shotgun sequence 690,532
NZ_FOQT01000003.1 Halpernia frigidisoli strain DSM 26000, whole genome shotgun sequence 423,926
NZ_FOQT01000004.1 Halpernia frigidisoli strain DSM 26000, whole genome shotgun sequence 417,488
NZ_FOQT01000005.1 Halpernia frigidisoli strain DSM 26000, whole genome shotgun sequence 377,250
NZ_FOQT01000006.1 Halpernia frigidisoli strain DSM 26000, whole genome shotgun sequence 8,473
NZ_FOQT01000007.1 Halpernia frigidisoli strain DSM 26000, whole genome shotgun sequence 7,881
NZ_FOQT01000008.1 Halpernia frigidisoli strain DSM 26000, whole genome shotgun sequence 5,920
NZ_FOQT01000009.1 Halpernia frigidisoli strain DSM 26000, whole genome shotgun sequence 4,172
NZ_FOQT01000010.1 Halpernia frigidisoli strain DSM 26000, whole genome shotgun sequence 3,573
NZ_FOQT01000011.1 Halpernia frigidisoli strain DSM 26000, whole genome shotgun sequence 2,053

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory