fast.genomicscompare 6,575 genera of bacteria & archaea

 

Loktanella salsilacus DSM 16199

Genome identifier: GCF_900114485.1

NCBI assembly name: IMG-taxon 2622736595 annotated assembly

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Loktanella, Loktanella salsilacus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Loktanella, Loktanella salsilacus

Scaffolds: 77

Genes: 4,007 Protein-coding: 3,882 RNAs: 56 pseudogenes: 69

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FOTF01000001.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 328,738
NZ_FOTF01000002.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 280,372
NZ_FOTF01000003.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 272,459
NZ_FOTF01000004.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 239,680
NZ_FOTF01000005.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 220,171
NZ_FOTF01000006.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 212,285
NZ_FOTF01000007.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 211,959
NZ_FOTF01000008.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 197,736
NZ_FOTF01000009.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 184,482
NZ_FOTF01000010.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 156,135
NZ_FOTF01000011.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 153,274
NZ_FOTF01000012.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 112,692
NZ_FOTF01000013.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 105,129
NZ_FOTF01000014.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 102,245
NZ_FOTF01000015.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 83,965
NZ_FOTF01000016.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 78,669
NZ_FOTF01000017.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 78,325
NZ_FOTF01000018.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 71,566
NZ_FOTF01000019.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 71,401
NZ_FOTF01000020.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 63,981
NZ_FOTF01000021.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 53,119
NZ_FOTF01000022.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 49,615
NZ_FOTF01000023.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 48,808
NZ_FOTF01000024.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 47,355
NZ_FOTF01000025.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 41,854
NZ_FOTF01000026.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 40,644
NZ_FOTF01000027.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 40,252
NZ_FOTF01000028.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 39,098
NZ_FOTF01000029.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 35,735
NZ_FOTF01000030.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 34,827
NZ_FOTF01000031.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 34,339
NZ_FOTF01000032.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 33,539
NZ_FOTF01000033.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 33,112
NZ_FOTF01000034.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 30,619
NZ_FOTF01000035.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 27,223
NZ_FOTF01000036.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 26,223
NZ_FOTF01000037.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 24,369
NZ_FOTF01000038.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 22,735
NZ_FOTF01000039.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 20,013
NZ_FOTF01000040.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 18,786
NZ_FOTF01000041.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 14,475
NZ_FOTF01000042.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 12,619
NZ_FOTF01000043.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 11,873
NZ_FOTF01000044.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 11,400
NZ_FOTF01000045.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 11,388
NZ_FOTF01000046.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 11,104
NZ_FOTF01000047.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 10,789
NZ_FOTF01000048.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 10,852
NZ_FOTF01000049.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 10,274
NZ_FOTF01000050.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 10,061
NZ_FOTF01000051.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 6,442
NZ_FOTF01000052.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 6,329
NZ_FOTF01000053.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 6,194
NZ_FOTF01000054.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 5,759
NZ_FOTF01000055.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 5,689
NZ_FOTF01000056.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 5,641
NZ_FOTF01000057.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 5,210
NZ_FOTF01000058.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 5,185
NZ_FOTF01000059.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 4,566
NZ_FOTF01000060.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 3,917
NZ_FOTF01000061.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 3,681
NZ_FOTF01000062.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 3,458
NZ_FOTF01000063.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 3,131
NZ_FOTF01000064.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 2,461
NZ_FOTF01000065.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 2,438
NZ_FOTF01000066.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 2,348
NZ_FOTF01000067.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 1,991
NZ_FOTF01000068.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 1,894
NZ_FOTF01000069.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 1,582
NZ_FOTF01000070.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 1,504
NZ_FOTF01000071.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 1,368
NZ_FOTF01000072.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 1,294
NZ_FOTF01000073.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 1,237
NZ_FOTF01000074.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 1,196
NZ_FOTF01000075.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 1,109
NZ_FOTF01000076.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 1,108
NZ_FOTF01000077.1 Loktanella salsilacus strain DSM 16199, whole genome shotgun sequence 1,059

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory