fast.genomicscompare 6,575 genera of bacteria & archaea

 

Halolamina pelagica CGMCC 1.10329

Genome identifier: GCF_900115675.1

NCBI assembly name: IMG-taxon 2663762745 annotated assembly

GTDB taxonomy: Archaea, Halobacteriota, Halobacteria, Halobacteriales, Haloferacaceae, Halolamina, Halolamina pelagica

NCBI taxonomy: Archaea, Euryarchaeota, Halobacteria, Haloferacales, Haloferacaceae, Halolamina, Halolamina pelagica

Scaffolds: 37

Genes: 3,300 Protein-coding: 3,185 RNAs: 53 pseudogenes: 62

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FOXI01000001.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 523,073
NZ_FOXI01000002.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 400,821
NZ_FOXI01000003.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 354,421
NZ_FOXI01000004.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 302,032
NZ_FOXI01000005.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 251,233
NZ_FOXI01000006.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 205,517
NZ_FOXI01000007.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 102,340
NZ_FOXI01000008.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 102,004
NZ_FOXI01000009.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 100,784
NZ_FOXI01000010.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 89,249
NZ_FOXI01000011.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 88,268
NZ_FOXI01000012.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 75,506
NZ_FOXI01000013.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 65,264
NZ_FOXI01000014.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 50,178
NZ_FOXI01000015.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 47,852
NZ_FOXI01000016.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 47,649
NZ_FOXI01000017.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 47,428
NZ_FOXI01000018.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 46,955
NZ_FOXI01000019.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 35,119
NZ_FOXI01000020.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 31,540
NZ_FOXI01000021.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 29,079
NZ_FOXI01000022.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 28,139
NZ_FOXI01000023.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 26,032
NZ_FOXI01000024.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 16,557
NZ_FOXI01000025.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 15,454
NZ_FOXI01000026.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 10,122
NZ_FOXI01000027.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 9,162
NZ_FOXI01000028.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 8,790
NZ_FOXI01000029.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 8,664
NZ_FOXI01000030.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 7,658
NZ_FOXI01000031.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 6,943
NZ_FOXI01000032.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 6,647
NZ_FOXI01000033.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 5,208
NZ_FOXI01000034.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 4,948
NZ_FOXI01000035.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 4,640
NZ_FOXI01000036.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 2,775
NZ_FOXI01000037.1 Halolamina pelagica strain CGMCC 1.10329, whole genome shotgun sequence 2,582

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory