fast.genomicscompare 6,575 genera of bacteria & archaea

 

Salipiger pacificus DSM 26894

Genome identifier: GCF_900116195.1

NCBI assembly name: IMG-taxon 2619618962 annotated assembly

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Salipiger, Salipiger pacificus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Yangia, Yangia pacifica

Scaffolds: 41

Genes: 5,811 Protein-coding: 5,697 RNAs: 58 pseudogenes: 56

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FOZW01000001.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 911,103
NZ_FOZW01000002.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 609,269
NZ_FOZW01000003.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 481,017
NZ_FOZW01000004.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 424,339
NZ_FOZW01000005.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 394,768
NZ_FOZW01000006.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 380,144
NZ_FOZW01000007.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 339,309
NZ_FOZW01000008.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 279,370
NZ_FOZW01000009.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 274,804
NZ_FOZW01000010.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 252,146
NZ_FOZW01000011.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 234,789
NZ_FOZW01000012.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 232,461
NZ_FOZW01000013.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 227,097
NZ_FOZW01000014.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 137,051
NZ_FOZW01000015.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 132,114
NZ_FOZW01000016.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 112,384
NZ_FOZW01000017.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 110,165
NZ_FOZW01000018.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 81,035
NZ_FOZW01000019.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 71,719
NZ_FOZW01000020.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 53,769
NZ_FOZW01000021.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 49,952
NZ_FOZW01000022.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 49,669
NZ_FOZW01000023.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 48,540
NZ_FOZW01000024.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 47,815
NZ_FOZW01000025.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 45,976
NZ_FOZW01000026.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 36,140
NZ_FOZW01000027.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 32,518
NZ_FOZW01000028.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 27,442
NZ_FOZW01000029.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 15,990
NZ_FOZW01000030.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 9,167
NZ_FOZW01000031.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 9,013
NZ_FOZW01000032.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 6,628
NZ_FOZW01000033.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 4,928
NZ_FOZW01000034.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 4,872
NZ_FOZW01000035.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 3,472
NZ_FOZW01000036.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 2,659
NZ_FOZW01000037.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 2,634
NZ_FOZW01000038.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 2,404
NZ_FOZW01000039.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 1,721
NZ_FOZW01000040.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 1,719
NZ_FOZW01000041.1 Alloyangia pacifica strain DSM 26894, whole genome shotgun sequence 1,546

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory