fast.genomicscompare 6,575 genera of bacteria & archaea

 

Lishizhenia tianjinensis CGMCC 1.7005

Genome identifier: GCF_900116425.1

NCBI assembly name: IMG-taxon 2667527393 annotated assembly

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Flavobacteriales, Crocinitomicaceae, Lishizhenia, Lishizhenia tianjinensis

NCBI taxonomy: Bacteria, Bacteroidota, Flavobacteriia, Flavobacteriales, Crocinitomicaceae, Lishizhenia, Lishizhenia tianjinensis

Scaffolds: 13

Genes: 3,134 Protein-coding: 3,074 RNAs: 49 pseudogenes: 11

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FPAS01000001.1 Lishizhenia tianjinensis strain CGMCC 1.7005, whole genome shotgun sequence 1,490,290
NZ_FPAS01000002.1 Lishizhenia tianjinensis strain CGMCC 1.7005, whole genome shotgun sequence 699,464
NZ_FPAS01000003.1 Lishizhenia tianjinensis strain CGMCC 1.7005, whole genome shotgun sequence 407,984
NZ_FPAS01000004.1 Lishizhenia tianjinensis strain CGMCC 1.7005, whole genome shotgun sequence 291,277
NZ_FPAS01000005.1 Lishizhenia tianjinensis strain CGMCC 1.7005, whole genome shotgun sequence 289,506
NZ_FPAS01000006.1 Lishizhenia tianjinensis strain CGMCC 1.7005, whole genome shotgun sequence 267,364
NZ_FPAS01000007.1 Lishizhenia tianjinensis strain CGMCC 1.7005, whole genome shotgun sequence 58,814
NZ_FPAS01000008.1 Lishizhenia tianjinensis strain CGMCC 1.7005, whole genome shotgun sequence 33,713
NZ_FPAS01000009.1 Lishizhenia tianjinensis strain CGMCC 1.7005, whole genome shotgun sequence 18,699
NZ_FPAS01000010.1 Lishizhenia tianjinensis strain CGMCC 1.7005, whole genome shotgun sequence 5,284
NZ_FPAS01000011.1 Lishizhenia tianjinensis strain CGMCC 1.7005, whole genome shotgun sequence 2,065
NZ_FPAS01000012.1 Lishizhenia tianjinensis strain CGMCC 1.7005, whole genome shotgun sequence 1,409
NZ_FPAS01000013.1 Lishizhenia tianjinensis strain CGMCC 1.7005, whole genome shotgun sequence 1,199

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory