fast.genomicscompare 6,575 genera of bacteria & archaea

 

Ga0077530 sp900117415 CS1BSMeth3

Genome identifier: GCF_900117415.1

NCBI assembly name: CS1BSMeth3_assembly_1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Hyphomicrobiaceae, Ga0077530, Ga0077530 sp900117415

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Hyphomicrobiaceae, Hyphomicrobium

Scaffolds: 6

Genes: 5,512 Protein-coding: 5,414 RNAs: 53 pseudogenes: 45

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FPEI01000001.1 Hyphomicrobium sp. CS1BSMeth3, whole genome shotgun sequence 1,443
NZ_FPEI01000002.1 Hyphomicrobium sp. CS1BSMeth3, whole genome shotgun sequence 362,557
NZ_FPEI01000003.1 Hyphomicrobium sp. CS1BSMeth3, whole genome shotgun sequence 556,428
NZ_FPEI01000004.1 Hyphomicrobium sp. CS1BSMeth3, whole genome shotgun sequence 1,059,465
NZ_FPEI01000005.1 Hyphomicrobium sp. CS1BSMeth3, whole genome shotgun sequence 1,316,457
NZ_FPEI01000006.1 Hyphomicrobium sp. CS1BSMeth3, whole genome shotgun sequence 2,724,464

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory