fast.genomicscompare 6,575 genera of bacteria & archaea

 

Hyphomicrobium_C sp900117455 CS1GBMeth3

Genome identifier: GCF_900117455.1

NCBI assembly name: CS1GBMeth3

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Hyphomicrobiaceae, Hyphomicrobium_C, Hyphomicrobium_C sp900117455

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Hyphomicrobiaceae, Hyphomicrobium

Scaffolds: 3

Genes: 3,835 Protein-coding: 3,745 RNAs: 56 pseudogenes: 34

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FPHO01000001.1 Hyphomicrobium sp. CS1GBMeth3, whole genome shotgun sequence 1,637
NZ_FPHO01000002.1 Hyphomicrobium sp. CS1GBMeth3, whole genome shotgun sequence 1,520,001
NZ_FPHO01000003.1 Hyphomicrobium sp. CS1GBMeth3, whole genome shotgun sequence 2,507,729

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory