fast.genomicscompare 6,575 genera of bacteria & archaea

 

Cognatiyoonia_A sediminum DSM 28715

Genome identifier: GCF_900129845.1

NCBI assembly name: IMG-taxon 2695421013 annotated assembly

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Cognatiyoonia_A, Cognatiyoonia_A sediminum

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Cognatiyoonia, Cognatiyoonia sediminum

Scaffolds: 16

Genes: 3,288 Protein-coding: 3,217 RNAs: 46 pseudogenes: 25

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FQXB01000001.1 Cognatiyoonia sediminum strain DSM 28715, whole genome shotgun sequence 1,636,816
NZ_FQXB01000002.1 Cognatiyoonia sediminum strain DSM 28715, whole genome shotgun sequence 426,889
NZ_FQXB01000003.1 Cognatiyoonia sediminum strain DSM 28715, whole genome shotgun sequence 362,173
NZ_FQXB01000004.1 Cognatiyoonia sediminum strain DSM 28715, whole genome shotgun sequence 213,622
NZ_FQXB01000005.1 Cognatiyoonia sediminum strain DSM 28715, whole genome shotgun sequence 182,365
NZ_FQXB01000006.1 Cognatiyoonia sediminum strain DSM 28715, whole genome shotgun sequence 153,904
NZ_FQXB01000007.1 Cognatiyoonia sediminum strain DSM 28715, whole genome shotgun sequence 135,115
NZ_FQXB01000008.1 Cognatiyoonia sediminum strain DSM 28715, whole genome shotgun sequence 109,329
NZ_FQXB01000009.1 Cognatiyoonia sediminum strain DSM 28715, whole genome shotgun sequence 24,968
NZ_FQXB01000010.1 Cognatiyoonia sediminum strain DSM 28715, whole genome shotgun sequence 3,550
NZ_FQXB01000011.1 Cognatiyoonia sediminum strain DSM 28715, whole genome shotgun sequence 2,382
NZ_FQXB01000012.1 Cognatiyoonia sediminum strain DSM 28715, whole genome shotgun sequence 1,823
NZ_FQXB01000013.1 Cognatiyoonia sediminum strain DSM 28715, whole genome shotgun sequence 1,289
NZ_FQXB01000014.1 Cognatiyoonia sediminum strain DSM 28715, whole genome shotgun sequence 1,125
NZ_FQXB01000015.1 Cognatiyoonia sediminum strain DSM 28715, whole genome shotgun sequence 1,072
NZ_FQXB01000016.1 Cognatiyoonia sediminum strain DSM 28715, whole genome shotgun sequence 1,068

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory