fast.genomicscompare 6,575 genera of bacteria & archaea

 

Clostridium_AA amylolyticum DSM 21864

Genome identifier: GCF_900142075.1

NCBI assembly name: IMG-taxon 2703719061 annotated assembly

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Clostridiales, Clostridiaceae, Clostridium_AA, Clostridium_AA amylolyticum

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Clostridiaceae, Clostridium, Clostridium amylolyticum

Scaffolds: 20

Genes: 4,086 Protein-coding: 3,965 RNAs: 82 pseudogenes: 39

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FQZO01000001.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 929,585
NZ_FQZO01000002.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 613,156
NZ_FQZO01000003.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 600,522
NZ_FQZO01000004.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 372,031
NZ_FQZO01000005.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 356,652
NZ_FQZO01000006.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 277,778
NZ_FQZO01000007.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 249,415
NZ_FQZO01000008.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 168,005
NZ_FQZO01000009.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 133,928
NZ_FQZO01000010.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 129,402
NZ_FQZO01000011.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 103,726
NZ_FQZO01000012.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 84,372
NZ_FQZO01000013.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 65,179
NZ_FQZO01000014.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 59,845
NZ_FQZO01000015.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 51,612
NZ_FQZO01000016.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 32,847
NZ_FQZO01000017.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 26,677
NZ_FQZO01000018.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 5,127
NZ_FQZO01000019.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 1,353
NZ_FQZO01000020.1 Clostridium amylolyticum strain DSM 21864, whole genome shotgun sequence 1,244

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory