fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudoxanthobacter soli DSM 19599

Genome identifier: GCF_900148505.1

NCBI assembly name: IMG-taxon 2585428043 annotated assembly

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Pseudoxanthobacteraceae, Pseudoxanthobacter, Pseudoxanthobacter soli

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Pseudoxanthobacteraceae, Pseudoxanthobacter, Pseudoxanthobacter soli

Scaffolds: 27

Genes: 4,406 Protein-coding: 4,306 RNAs: 60 pseudogenes: 40

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FRXO01000001.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 1,062,706
NZ_FRXO01000002.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 737,595
NZ_FRXO01000003.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 619,785
NZ_FRXO01000004.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 567,156
NZ_FRXO01000005.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 460,576
NZ_FRXO01000006.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 369,228
NZ_FRXO01000007.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 189,490
NZ_FRXO01000008.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 157,663
NZ_FRXO01000009.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 146,323
NZ_FRXO01000010.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 145,402
NZ_FRXO01000011.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 128,404
NZ_FRXO01000012.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 123,251
NZ_FRXO01000013.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 106,981
NZ_FRXO01000014.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 89,713
NZ_FRXO01000015.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 88,540
NZ_FRXO01000016.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 74,702
NZ_FRXO01000017.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 54,140
NZ_FRXO01000018.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 19,237
NZ_FRXO01000019.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 4,990
NZ_FRXO01000020.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 4,916
NZ_FRXO01000021.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 4,533
NZ_FRXO01000022.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 2,174
NZ_FRXO01000023.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 1,965
NZ_FRXO01000024.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 1,661
NZ_FRXO01000025.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 1,604
NZ_FRXO01000026.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 1,422
NZ_FRXO01000027.1 Pseudoxanthobacter soli DSM 19599, whole genome shotgun sequence 1,085

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory