fast.genomicscompare 6,575 genera of bacteria & archaea

 

RU20A sp900155885 RU20A

Genome identifier: GCF_900155885.1

NCBI assembly name: IMG-taxon 2708742416 annotated assembly

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, RU20A, RU20A sp900155885

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Rhizobiaceae, Rhizobium

Scaffolds: 21

Genes: 4,258 Protein-coding: 4,153 RNAs: 52 pseudogenes: 53

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FTMB01000001.1 Rhizobium sp. RU20A, whole genome shotgun sequence 1,800,321
NZ_FTMB01000002.1 Rhizobium sp. RU20A, whole genome shotgun sequence 393,106
NZ_FTMB01000003.1 Rhizobium sp. RU20A, whole genome shotgun sequence 333,774
NZ_FTMB01000004.1 Rhizobium sp. RU20A, whole genome shotgun sequence 294,395
NZ_FTMB01000005.1 Rhizobium sp. RU20A, whole genome shotgun sequence 268,068
NZ_FTMB01000006.1 Rhizobium sp. RU20A, whole genome shotgun sequence 266,536
NZ_FTMB01000007.1 Rhizobium sp. RU20A, whole genome shotgun sequence 212,998
NZ_FTMB01000008.1 Rhizobium sp. RU20A, whole genome shotgun sequence 168,456
NZ_FTMB01000009.1 Rhizobium sp. RU20A, whole genome shotgun sequence 150,466
NZ_FTMB01000010.1 Rhizobium sp. RU20A, whole genome shotgun sequence 140,124
NZ_FTMB01000011.1 Rhizobium sp. RU20A, whole genome shotgun sequence 118,745
NZ_FTMB01000012.1 Rhizobium sp. RU20A, whole genome shotgun sequence 94,905
NZ_FTMB01000013.1 Rhizobium sp. RU20A, whole genome shotgun sequence 87,567
NZ_FTMB01000014.1 Rhizobium sp. RU20A, whole genome shotgun sequence 85,242
NZ_FTMB01000015.1 Rhizobium sp. RU20A, whole genome shotgun sequence 80,863
NZ_FTMB01000016.1 Rhizobium sp. RU20A, whole genome shotgun sequence 13,986
NZ_FTMB01000017.1 Rhizobium sp. RU20A, whole genome shotgun sequence 6,670
NZ_FTMB01000018.1 Rhizobium sp. RU20A, whole genome shotgun sequence 6,137
NZ_FTMB01000019.1 Rhizobium sp. RU20A, whole genome shotgun sequence 1,515
NZ_FTMB01000020.1 Rhizobium sp. RU20A, whole genome shotgun sequence 1,415
NZ_FTMB01000021.1 Rhizobium sp. RU20A, whole genome shotgun sequence 1,242

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory