fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudooctadecabacter jejudonensis CECT 8397

Genome identifier: GCF_900172275.1

NCBI assembly name: P.jejudonensis_CECT8397_Spades_Prokka

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Pseudooctadecabacter, Pseudooctadecabacter jejudonensis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Pseudooctadecabacter, Pseudooctadecabacter jejudonensis

Scaffolds: 15

Genes: 3,374 Protein-coding: 3,303 RNAs: 49 pseudogenes: 22

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FWFT01000001.1 Pseudooctadecabacter jejudonensis strain CECT 8397, whole genome shotgun sequence 1,043,057
NZ_FWFT01000002.1 Pseudooctadecabacter jejudonensis strain CECT 8397, whole genome shotgun sequence 827,064
NZ_FWFT01000003.1 Pseudooctadecabacter jejudonensis strain CECT 8397, whole genome shotgun sequence 619,715
NZ_FWFT01000004.1 Pseudooctadecabacter jejudonensis strain CECT 8397, whole genome shotgun sequence 274,677
NZ_FWFT01000005.1 Pseudooctadecabacter jejudonensis strain CECT 8397, whole genome shotgun sequence 260,175
NZ_FWFT01000006.1 Pseudooctadecabacter jejudonensis strain CECT 8397, whole genome shotgun sequence 220,733
NZ_FWFT01000007.1 Pseudooctadecabacter jejudonensis strain CECT 8397, whole genome shotgun sequence 134,421
NZ_FWFT01000008.1 Pseudooctadecabacter jejudonensis strain CECT 8397, whole genome shotgun sequence 11,625
NZ_FWFT01000009.1 Pseudooctadecabacter jejudonensis strain CECT 8397, whole genome shotgun sequence 6,035
NZ_FWFT01000010.1 Pseudooctadecabacter jejudonensis strain CECT 8397, whole genome shotgun sequence 5,513
NZ_FWFT01000011.1 Pseudooctadecabacter jejudonensis strain CECT 8397, whole genome shotgun sequence 4,768
NZ_FWFT01000012.1 Pseudooctadecabacter jejudonensis strain CECT 8397, whole genome shotgun sequence 1,604
NZ_FWFT01000013.1 Pseudooctadecabacter jejudonensis strain CECT 8397, whole genome shotgun sequence 1,218
NZ_FWFT01000014.1 Pseudooctadecabacter jejudonensis strain CECT 8397, whole genome shotgun sequence 1,195
NZ_FWFT01000015.1 Pseudooctadecabacter jejudonensis strain CECT 8397, whole genome shotgun sequence 827

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory