fast.genomicscompare 6,575 genera of bacteria & archaea

 

Tropicibacter naphthalenivorans DSM 19561

Genome identifier: GCF_900176475.1

NCBI assembly name: IMG-taxon 2622736506 annotated assembly

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Tropicibacter, Tropicibacter naphthalenivorans

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Tropicibacter, Tropicibacter naphthalenivorans

Scaffolds: 32

Genes: 4,287 Protein-coding: 4,166 RNAs: 59 pseudogenes: 62

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FWXX01000001.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 898,086
NZ_FWXX01000002.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 774,986
NZ_FWXX01000003.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 393,875
NZ_FWXX01000004.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 370,416
NZ_FWXX01000005.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 328,186
NZ_FWXX01000006.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 266,038
NZ_FWXX01000007.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 228,673
NZ_FWXX01000008.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 175,743
NZ_FWXX01000009.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 150,492
NZ_FWXX01000010.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 144,504
NZ_FWXX01000011.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 117,590
NZ_FWXX01000012.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 73,038
NZ_FWXX01000013.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 62,901
NZ_FWXX01000014.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 58,578
NZ_FWXX01000015.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 54,517
NZ_FWXX01000016.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 49,257
NZ_FWXX01000017.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 41,105
NZ_FWXX01000018.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 40,805
NZ_FWXX01000019.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 39,750
NZ_FWXX01000020.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 30,988
NZ_FWXX01000021.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 26,669
NZ_FWXX01000022.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 25,117
NZ_FWXX01000023.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 21,036
NZ_FWXX01000024.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 17,331
NZ_FWXX01000025.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 16,900
NZ_FWXX01000026.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 13,578
NZ_FWXX01000027.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 9,719
NZ_FWXX01000028.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 7,444
NZ_FWXX01000029.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 6,352
NZ_FWXX01000030.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 2,450
NZ_FWXX01000031.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 2,234
NZ_FWXX01000032.1 Tropicibacter naphthalenivorans strain DSM 19561, whole genome shotgun sequence 1,132

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory