fast.genomicscompare 6,575 genera of bacteria & archaea

 

Clostridium_E merdae Marseille-P2953

Genome identifier: GCF_900176635.1

NCBI assembly name: PRJEB20369

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Oscillospirales, Acutalibacteraceae, Clostridium_E, Clostridium_E merdae

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Clostridiaceae, Clostridium, Clostridium merdae

Scaffolds: 4

Genes: 2,690 Protein-coding: 2,613 RNAs: 65 pseudogenes: 12

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FXLN01000001.1 Clostridium merdae strain Marseille-P2953, whole genome shotgun sequence 2,026
NZ_FXLN01000002.1 Clostridium merdae strain Marseille-P2953, whole genome shotgun sequence 391,774
NZ_FXLN01000003.1 Clostridium merdae strain Marseille-P2953, whole genome shotgun sequence 743,709
NZ_FXLN01000004.1 Clostridium merdae strain Marseille-P2953, whole genome shotgun sequence 1,611,351

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory