fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudobacteriovorax antillogorgiicola RKEM611

Genome identifier: GCF_900177345.1

NCBI assembly name: IMG-taxon 2708742533 annotated assembly

GTDB taxonomy: Bacteria, Bdellovibrionota, Oligoflexia, Oligoflexales, Oligoflexaceae, Pseudobacteriovorax, Pseudobacteriovorax antillogorgiicola

NCBI taxonomy: Bacteria, Bdellovibrionota, Oligoflexia, Oligoflexales, Pseudobacteriovoracaceae, Pseudobacteriovorax, Pseudobacteriovorax antillogorgiicola

Scaffolds: 68

Genes: 6,307 Protein-coding: 6,231 RNAs: 50 pseudogenes: 26

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FWZT01000001.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 485,354
NZ_FWZT01000002.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 485,325
NZ_FWZT01000003.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 418,870
NZ_FWZT01000004.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 394,867
NZ_FWZT01000005.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 362,161
NZ_FWZT01000006.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 303,830
NZ_FWZT01000007.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 295,977
NZ_FWZT01000008.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 279,767
NZ_FWZT01000009.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 238,854
NZ_FWZT01000010.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 236,319
NZ_FWZT01000011.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 219,649
NZ_FWZT01000012.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 213,921
NZ_FWZT01000013.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 197,726
NZ_FWZT01000014.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 196,332
NZ_FWZT01000015.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 193,855
NZ_FWZT01000016.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 184,096
NZ_FWZT01000017.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 182,406
NZ_FWZT01000018.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 167,051
NZ_FWZT01000019.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 159,916
NZ_FWZT01000020.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 158,844
NZ_FWZT01000021.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 158,140
NZ_FWZT01000022.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 157,390
NZ_FWZT01000023.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 135,057
NZ_FWZT01000024.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 118,361
NZ_FWZT01000025.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 112,775
NZ_FWZT01000026.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 106,794
NZ_FWZT01000027.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 105,557
NZ_FWZT01000028.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 89,264
NZ_FWZT01000029.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 88,258
NZ_FWZT01000030.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 84,094
NZ_FWZT01000031.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 83,199
NZ_FWZT01000032.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 80,481
NZ_FWZT01000033.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 70,598
NZ_FWZT01000034.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 56,003
NZ_FWZT01000035.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 55,889
NZ_FWZT01000036.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 39,518
NZ_FWZT01000037.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 31,626
NZ_FWZT01000038.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 24,941
NZ_FWZT01000039.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 24,888
NZ_FWZT01000040.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 24,758
NZ_FWZT01000041.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 24,166
NZ_FWZT01000042.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 23,892
NZ_FWZT01000043.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 22,495
NZ_FWZT01000044.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 20,468
NZ_FWZT01000045.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 18,061
NZ_FWZT01000046.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 16,693
NZ_FWZT01000047.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 16,462
NZ_FWZT01000048.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 13,354
NZ_FWZT01000049.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 12,315
NZ_FWZT01000050.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 12,091
NZ_FWZT01000051.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 10,265
NZ_FWZT01000052.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 9,895
NZ_FWZT01000053.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 9,698
NZ_FWZT01000054.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 7,775
NZ_FWZT01000055.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 5,272
NZ_FWZT01000056.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 5,070
NZ_FWZT01000057.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 3,534
NZ_FWZT01000058.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 3,243
NZ_FWZT01000059.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 2,271
NZ_FWZT01000060.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 2,187
NZ_FWZT01000061.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 2,187
NZ_FWZT01000062.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 1,924
NZ_FWZT01000063.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 1,763
NZ_FWZT01000064.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 1,706
NZ_FWZT01000065.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 1,685
NZ_FWZT01000066.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 1,668
NZ_FWZT01000067.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 1,448
NZ_FWZT01000068.1 Pseudobacteriovorax antillogorgiicola strain RKEM611, whole genome shotgun sequence 1,119

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory