fast.genomicscompare 6,575 genera of bacteria & archaea

 

Clostridium_AK sp900185645 BSD9I1

Genome identifier: GCF_900185645.1

NCBI assembly name: BSD9I1 assembly 1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Clostridiales, Clostridiaceae, Clostridium_AK, Clostridium_AK sp900185645

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Clostridiaceae, Clostridium

Scaffolds: 27

Genes: 3,779 Protein-coding: 3,620 RNAs: 123 pseudogenes: 36

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_FYAM01000001.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 617
NZ_FYAM01000002.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 64,684
NZ_FYAM01000003.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 40,107
NZ_FYAM01000004.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 372,498
NZ_FYAM01000005.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 160,991
NZ_FYAM01000006.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 412,762
NZ_FYAM01000007.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 46,159
NZ_FYAM01000008.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 34,058
NZ_FYAM01000009.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 615
NZ_FYAM01000010.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 24,518
NZ_FYAM01000011.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 350,668
NZ_FYAM01000012.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 773
NZ_FYAM01000013.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 17,619
NZ_FYAM01000014.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 3,244
NZ_FYAM01000015.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 2,456
NZ_FYAM01000016.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 5,405
NZ_FYAM01000017.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 3,011
NZ_FYAM01000018.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 1,740
NZ_FYAM01000019.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 1,609
NZ_FYAM01000020.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 1,115
NZ_FYAM01000021.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 1,047
NZ_FYAM01000022.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 1,095
NZ_FYAM01000023.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 1,200,121
NZ_FYAM01000024.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 418,250
NZ_FYAM01000025.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 153,562
NZ_FYAM01000026.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 121,417
NZ_FYAM01000027.1 Clostridium sp. BSD9I1, whole genome shotgun sequence 414,566

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory