fast.genomicscompare 6,575 genera of bacteria & archaea

 

Rhodopseudomonas pentothenatexigens JA575

Genome identifier: GCF_900218015.1

NCBI assembly name: IMG-taxon 2740891836 annotated assembly

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Xanthobacteraceae, Rhodopseudomonas, Rhodopseudomonas pentothenatexigens

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Nitrobacteraceae, Rhodopseudomonas, Rhodopseudomonas pentothenatexigens

Scaffolds: 69

Genes: 4,963 Protein-coding: 4,857 RNAs: 54 pseudogenes: 52

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_UFQQ01000001.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 322,676
NZ_UFQQ01000002.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 318,551
NZ_UFQQ01000003.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 275,285
NZ_UFQQ01000004.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 262,083
NZ_UFQQ01000005.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 261,597
NZ_UFQQ01000006.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 246,810
NZ_UFQQ01000007.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 245,106
NZ_UFQQ01000008.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 228,840
NZ_UFQQ01000009.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 214,398
NZ_UFQQ01000010.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 212,810
NZ_UFQQ01000011.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 194,650
NZ_UFQQ01000012.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 184,715
NZ_UFQQ01000013.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 169,380
NZ_UFQQ01000014.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 155,125
NZ_UFQQ01000015.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 148,480
NZ_UFQQ01000016.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 121,102
NZ_UFQQ01000017.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 109,778
NZ_UFQQ01000018.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 92,330
NZ_UFQQ01000019.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 90,726
NZ_UFQQ01000020.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 89,653
NZ_UFQQ01000021.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 87,503
NZ_UFQQ01000022.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 84,590
NZ_UFQQ01000023.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 83,794
NZ_UFQQ01000024.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 74,665
NZ_UFQQ01000025.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 69,839
NZ_UFQQ01000026.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 69,366
NZ_UFQQ01000027.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 61,440
NZ_UFQQ01000028.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 60,778
NZ_UFQQ01000029.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 60,364
NZ_UFQQ01000030.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 51,046
NZ_UFQQ01000031.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 50,834
NZ_UFQQ01000032.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 49,936
NZ_UFQQ01000033.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 48,163
NZ_UFQQ01000034.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 44,406
NZ_UFQQ01000035.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 43,698
NZ_UFQQ01000036.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 40,767
NZ_UFQQ01000037.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 39,419
NZ_UFQQ01000038.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 36,879
NZ_UFQQ01000039.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 33,659
NZ_UFQQ01000040.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 33,337
NZ_UFQQ01000041.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 28,174
NZ_UFQQ01000042.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 27,902
NZ_UFQQ01000043.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 27,237
NZ_UFQQ01000044.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 26,073
NZ_UFQQ01000045.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 25,500
NZ_UFQQ01000046.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 24,822
NZ_UFQQ01000047.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 21,580
NZ_UFQQ01000048.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 20,656
NZ_UFQQ01000049.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 14,467
NZ_UFQQ01000050.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 13,301
NZ_UFQQ01000051.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 12,911
NZ_UFQQ01000052.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 11,806
NZ_UFQQ01000053.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 11,005
NZ_UFQQ01000054.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 8,419
NZ_UFQQ01000055.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 5,626
NZ_UFQQ01000056.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 5,073
NZ_UFQQ01000057.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 4,929
NZ_UFQQ01000058.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 4,538
NZ_UFQQ01000059.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 3,848
NZ_UFQQ01000060.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 3,241
NZ_UFQQ01000061.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 2,474
NZ_UFQQ01000062.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 2,373
NZ_UFQQ01000063.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 1,495
NZ_UFQQ01000064.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 1,445
NZ_UFQQ01000065.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 1,328
NZ_UFQQ01000066.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 1,321
NZ_UFQQ01000067.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 1,140
NZ_UFQQ01000068.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 1,081
NZ_UFQQ01000069.1 Rhodopseudomonas pentothenatexigens strain JA575, whole genome shotgun sequence 1,018

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory