fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudobutyrivibrio ruminis DSM 9787

Genome identifier: GCF_900218035.1

NCBI assembly name: IMG-taxon 2596583532 annotated assembly

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Lachnospiraceae, Pseudobutyrivibrio, Pseudobutyrivibrio ruminis

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Lachnospiraceae, Pseudobutyrivibrio, Pseudobutyrivibrio ruminis

Scaffolds: 18

Genes: 2,818 Protein-coding: 2,727 RNAs: 81 pseudogenes: 10

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_OBMR01000001.1 Pseudobutyrivibrio ruminis DSM 9787, whole genome shotgun sequence 973
NZ_OBMR01000002.1 Pseudobutyrivibrio ruminis DSM 9787, whole genome shotgun sequence 406,588
NZ_OBMR01000003.1 Pseudobutyrivibrio ruminis DSM 9787, whole genome shotgun sequence 340,923
NZ_OBMR01000004.1 Pseudobutyrivibrio ruminis DSM 9787, whole genome shotgun sequence 325,967
NZ_OBMR01000005.1 Pseudobutyrivibrio ruminis DSM 9787, whole genome shotgun sequence 320,930
NZ_OBMR01000006.1 Pseudobutyrivibrio ruminis DSM 9787, whole genome shotgun sequence 287,553
NZ_OBMR01000007.1 Pseudobutyrivibrio ruminis DSM 9787, whole genome shotgun sequence 249,533
NZ_OBMR01000008.1 Pseudobutyrivibrio ruminis DSM 9787, whole genome shotgun sequence 246,155
NZ_OBMR01000009.1 Pseudobutyrivibrio ruminis DSM 9787, whole genome shotgun sequence 136,185
NZ_OBMR01000010.1 Pseudobutyrivibrio ruminis DSM 9787, whole genome shotgun sequence 131,662
NZ_OBMR01000011.1 Pseudobutyrivibrio ruminis DSM 9787, whole genome shotgun sequence 127,404
NZ_OBMR01000012.1 Pseudobutyrivibrio ruminis DSM 9787, whole genome shotgun sequence 113,868
NZ_OBMR01000013.1 Pseudobutyrivibrio ruminis DSM 9787, whole genome shotgun sequence 101,018
NZ_OBMR01000014.1 Pseudobutyrivibrio ruminis DSM 9787, whole genome shotgun sequence 76,688
NZ_OBMR01000015.1 Pseudobutyrivibrio ruminis DSM 9787, whole genome shotgun sequence 71,979
NZ_OBMR01000016.1 Pseudobutyrivibrio ruminis DSM 9787, whole genome shotgun sequence 53,093
NZ_OBMR01000017.1 Pseudobutyrivibrio ruminis DSM 9787, whole genome shotgun sequence 28,742
NZ_OBMR01000018.1 Pseudobutyrivibrio ruminis DSM 9787, whole genome shotgun sequence 1,117

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory