fast.genomics – compare 6,575 genera of bacteria & archaea

 

Miniphocaeibacter massiliensis Marseille-P4678

Genome identifier: GCF_900232905.1

NCBI assembly name: PRJEB22825

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Tissierellales, Peptoniphilaceae, Miniphocaeibacter, Miniphocaeibacter massiliensis

NCBI taxonomy: Bacteria, Bacillota, Tissierellia, Tissierellales, Peptoniphilaceae, Miniphocaeibacter, Miniphocaeibacter massiliensis

Scaffolds: 13

Genes: 2,166 Protein-coding: 2,102 RNAs: 55 pseudogenes: 9

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_OCTQ01000001.1 Miniphocaeibacter massiliensis strain Marseille-P4678, whole genome shotgun sequence 772,215
NZ_OCTQ01000002.1 Miniphocaeibacter massiliensis strain Marseille-P4678, whole genome shotgun sequence 433,151
NZ_OCTQ01000003.1 Miniphocaeibacter massiliensis strain Marseille-P4678, whole genome shotgun sequence 322,657
NZ_OCTQ01000004.1 Miniphocaeibacter massiliensis strain Marseille-P4678, whole genome shotgun sequence 188,245
NZ_OCTQ01000005.1 Miniphocaeibacter massiliensis strain Marseille-P4678, whole genome shotgun sequence 136,685
NZ_OCTQ01000006.1 Miniphocaeibacter massiliensis strain Marseille-P4678, whole genome shotgun sequence 100,588
NZ_OCTQ01000007.1 Miniphocaeibacter massiliensis strain Marseille-P4678, whole genome shotgun sequence 47,211
NZ_OCTQ01000008.1 Miniphocaeibacter massiliensis strain Marseille-P4678, whole genome shotgun sequence 44,083
NZ_OCTQ01000009.1 Miniphocaeibacter massiliensis strain Marseille-P4678, whole genome shotgun sequence 18,333
NZ_OCTQ01000010.1 Miniphocaeibacter massiliensis strain Marseille-P4678, whole genome shotgun sequence 6,853
NZ_OCTQ01000011.1 Miniphocaeibacter massiliensis strain Marseille-P4678, whole genome shotgun sequence 5,174
NZ_OCTQ01000012.1 Miniphocaeibacter massiliensis strain Marseille-P4678, whole genome shotgun sequence 1,591
NZ_OCTQ01000013.1 Miniphocaeibacter massiliensis strain Marseille-P4678, whole genome shotgun sequence 862

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory