fast.genomicscompare 6,575 genera of bacteria & archaea

 

Dorea_B phocaeensis Marseille-P4003

Genome identifier: GCF_900240315.1

NCBI assembly name: PRJEB22820

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Lachnospirales, Lachnospiraceae, Dorea_B, Dorea_B phocaeensis

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Lachnospiraceae, Dorea, Dorea phocaeensis

Scaffolds: 12

Genes: 2,374 Protein-coding: 2,279 RNAs: 62 pseudogenes: 33

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_OEPZ01000001.1 Dorea phocaeensis strain Marseille-P4003, whole genome shotgun sequence 845,705
NZ_OEPZ01000002.1 Dorea phocaeensis strain Marseille-P4003, whole genome shotgun sequence 637,407
NZ_OEPZ01000003.1 Dorea phocaeensis strain Marseille-P4003, whole genome shotgun sequence 435,699
NZ_OEPZ01000004.1 Dorea phocaeensis strain Marseille-P4003, whole genome shotgun sequence 193,423
NZ_OEPZ01000005.1 Dorea phocaeensis strain Marseille-P4003, whole genome shotgun sequence 178,357
NZ_OEPZ01000006.1 Dorea phocaeensis strain Marseille-P4003, whole genome shotgun sequence 120,036
NZ_OEPZ01000007.1 Dorea phocaeensis strain Marseille-P4003, whole genome shotgun sequence 16,415
NZ_OEPZ01000008.1 Dorea phocaeensis strain Marseille-P4003, whole genome shotgun sequence 16,293
NZ_OEPZ01000009.1 Dorea phocaeensis strain Marseille-P4003, whole genome shotgun sequence 10,775
NZ_OEPZ01000010.1 Dorea phocaeensis strain Marseille-P4003, whole genome shotgun sequence 5,513
NZ_OEPZ01000011.1 Dorea phocaeensis strain Marseille-P4003, whole genome shotgun sequence 5,153
NZ_OEPZ01000012.1 Dorea phocaeensis strain Marseille-P4003, whole genome shotgun sequence 2,846

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory