fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudoruminococcus massiliensis Marseille-P3876

Genome identifier: GCF_900291955.1

NCBI assembly name: PRJEB24956

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Oscillospirales, Acutalibacteraceae, Pseudoruminococcus, Pseudoruminococcus massiliensis

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Oscillospiraceae, Pseudoruminococcus, Pseudoruminococcus massiliensis

Scaffolds: 19

Genes: 2,273 Protein-coding: 2,186 RNAs: 56 pseudogenes: 31

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_OLMR01000001.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 628,657
NZ_OLMR01000002.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 556,337
NZ_OLMR01000003.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 329,808
NZ_OLMR01000004.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 155,155
NZ_OLMR01000005.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 146,636
NZ_OLMR01000006.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 139,265
NZ_OLMR01000007.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 131,614
NZ_OLMR01000008.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 84,088
NZ_OLMR01000009.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 58,884
NZ_OLMR01000010.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 58,470
NZ_OLMR01000011.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 52,570
NZ_OLMR01000012.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 22,168
NZ_OLMR01000013.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 19,954
NZ_OLMR01000014.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 13,857
NZ_OLMR01000015.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 8,761
NZ_OLMR01000016.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 7,518
NZ_OLMR01000017.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 5,513
NZ_OLMR01000018.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 5,279
NZ_OLMR01000019.1 Pseudoruminococcus massiliensis strain Marseille-P3876, whole genome shotgun sequence 3,876

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory