fast.genomicscompare 6,575 genera of bacteria & archaea

 

Parabacteroides_B pacaensis Marseille-P4001

Genome identifier: GCF_900292045.1

NCBI assembly name: PRJEB24955

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Bacteroidales, Tannerellaceae, Parabacteroides_B, Parabacteroides_B pacaensis

NCBI taxonomy: Bacteria, Bacteroidota, Bacteroidia, Bacteroidales, Tannerellaceae, Parabacteroides, Parabacteroides pacaensis

Scaffolds: 14

Genes: 4,175 Protein-coding: 4,008 RNAs: 89 pseudogenes: 78

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_OLMS01000001.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence 17,168
NZ_OLMS01000002.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence 2,417,650
NZ_OLMS01000003.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence 1,173,292
NZ_OLMS01000004.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence 228,826
NZ_OLMS01000005.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence 999,072
NZ_OLMS01000006.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence 306,043
NZ_OLMS01000007.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence 81,177
NZ_OLMS01000008.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence 3,645
NZ_OLMS01000009.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence 3,284
NZ_OLMS01000010.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence 2,339
NZ_OLMS01000011.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence 2,205
NZ_OLMS01000012.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence 1,841
NZ_OLMS01000013.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence 1,219
NZ_OLMS01000014.1 Parabacteroides pacaensis strain Marseille-P4001, whole genome shotgun sequence 867

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory