fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudoprimorskyibacter insulae CECT 8871

Genome identifier: GCF_900302505.1

NCBI assembly name: P.insulaeCECT8871_Spades_Prokka

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Pseudoprimorskyibacter, Pseudoprimorskyibacter insulae

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Pseudoprimorskyibacter, Pseudoprimorskyibacter insulae

Scaffolds: 28

Genes: 3,896 Protein-coding: 3,810 RNAs: 49 pseudogenes: 37

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_OMOJ01000001.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 1,100,942
NZ_OMOJ01000002.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 757,060
NZ_OMOJ01000003.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 350,329
NZ_OMOJ01000004.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 339,707
NZ_OMOJ01000005.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 298,126
NZ_OMOJ01000006.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 147,215
NZ_OMOJ01000007.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 134,754
NZ_OMOJ01000008.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 107,372
NZ_OMOJ01000009.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 101,123
NZ_OMOJ01000010.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 92,779
NZ_OMOJ01000011.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 83,281
NZ_OMOJ01000012.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 80,558
NZ_OMOJ01000013.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 72,595
NZ_OMOJ01000014.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 71,204
NZ_OMOJ01000015.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 60,437
NZ_OMOJ01000016.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 58,222
NZ_OMOJ01000017.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 40,553
NZ_OMOJ01000018.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 37,349
NZ_OMOJ01000019.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 31,962
NZ_OMOJ01000020.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 22,978
NZ_OMOJ01000021.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 5,513
NZ_OMOJ01000022.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 3,552
NZ_OMOJ01000023.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 2,259
NZ_OMOJ01000024.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 1,791
NZ_OMOJ01000025.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 1,340
NZ_OMOJ01000026.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 1,271
NZ_OMOJ01000027.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 1,181
NZ_OMOJ01000028.1 Pseudoprimorskyibacter insulae strain CECT 8871, whole genome shotgun sequence 837

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory