fast.genomicscompare 6,575 genera of bacteria & archaea

 

Alg239-R122 sp900537065 Alg239-R122

Genome identifier: GCF_900537065.1

NCBI assembly name: ASM90053706v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Alg239-R122, Alg239-R122 sp900537065

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingorhabdus

Scaffolds: 21

Genes: 2,437 Protein-coding: 2,380 RNAs: 45 pseudogenes: 12

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_UNRC01000001.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 413,445
NZ_UNRC01000002.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 422,127
NZ_UNRC01000003.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 336,849
NZ_UNRC01000004.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 228,339
NZ_UNRC01000005.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 174,230
NZ_UNRC01000006.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 168,834
NZ_UNRC01000007.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 155,767
NZ_UNRC01000008.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 86,405
NZ_UNRC01000009.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 77,223
NZ_UNRC01000010.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 62,752
NZ_UNRC01000011.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 61,746
NZ_UNRC01000012.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 59,632
NZ_UNRC01000013.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 53,332
NZ_UNRC01000014.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 46,801
NZ_UNRC01000015.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 44,361
NZ_UNRC01000016.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 39,076
NZ_UNRC01000017.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 30,823
NZ_UNRC01000018.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 14,933
NZ_UNRC01000019.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 12,663
NZ_UNRC01000020.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 8,531
NZ_UNRC01000021.1 Sphingorhabdus sp. Alg239-R122, whole genome shotgun sequence 2,875

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory